Evolife

Jean-Louis Dessalles


  1. Overall description
  2. How to execute Evolife (+ download)
  3. Evolife source files
  4. Evolife classes
  5. Evolife functions
  6. How Evolife works
  7. Create your own Evolife scenario
  8. Use Evolife’s components separately (graphics, ecology, genetic algorithm)




3. Evolife Source files

The package contains:

        

Python source files

Alliances.py: Defines social links between individuals. Useful for certain scenarios.
Curves.py: Stores points to be displayed on curves
Default_Scenario.py: Implements a default scenario from which actual scenarios are derived.
DNA.py: Where the hereditary binary string is defined, and crossover and mutation are implemented.
Evolife_Batch.py: A silent (no graphic) version of Evolife for batch mode.
Evolife_Graphic.py: A few displays specific to Evolife.
Evolife_Main.py: Evolife main file.
Evolife_Window.py: Window system for Evolife. The 2012 version and later are based on QT (previous versions used Tk).
Genetic_map.py: Defines the location of genes on the DNA string.
Genome.py: Defines the genome of individuals as a set of genes.
Group.py: Defines groups, where reproduction and interactions take place.
Individual.py: Defines the individual’s properties, which bring together a genome, a phenome and social relations.
MyScenario.py: This file is used to instantiate the scenario and make it accessible to all other modules.
Observer.py: Stores simulation results and performs statistics.
Parameters.py: Interface with configuration file Evolife.evo
Phenotype.py: Defines a set of non-inheritable characteristics called ‘phenes’.
Plot_Area.py: Defines a zone to display graphics. Can be used independently from Evolife.
Population.py: Defines the whole population as a set of groups.
S_*.py: Specific scenarios.
Simulation_Thread.py: Interface with Evolife’s window system.
Tools.py: A few useful functions.
TxtWin.py: Defines a zone to display texts. Can be used independently from Evolife.
Void_Scenario.py: A scenario that can be customized. Its execution launches Evolife’s window system directly, thus bypassing Evolife_Main.py.

Other files

labyr.gif: Image of the labyrinth (used in one basic scenario).
*.csv: Files created by Evolife. They contain evolution curve coordinates (as they are displayed). These files can be opened with MS-Excel.
*.res: Files created by Evolife. They contain coordinates for each curve, averaged over time. Such files may be concatenated to average over several experiments (useful in batch mode).
EvoStart.gen: This file contains (in text format) the genome of an entire population to start from (if that option is chosen).
Readme.html: Evolife documentation.
Readme.txt: A text version of this file.
Evolife.html: Homepage for the Evolife package.

Applications

Antnet.py: Ant system for message routing.
Ants.py: Foraging ant colony.
CellularAutomaton.py: Illustrates one-dimensional cellular automata.
Cocktail.py: Illustrates the ‘cocktail party’ effect.
Morphogenesis.py: Illustrates Turing’s morphogenesis theory.
PathFinder.py: Illustrates path formation.
Segregationism.py: Illustrates Thomas Schelling’s famous experiment.
SocialNetwork.py: Emergence of optimal social signals.
Swallows.py: Illustrates collective decision.